User`s guide
Chapter 8 Maintenance and Troubleshooting
8-22 PerSeptive Biosystems
8
8.2.3 Hardware Troubleshooting
This section includes:
• Mass spectrometer troubleshooting
• Vacuum gauge panel troubleshooting
Table 8-4 Mass Spectrometer Troubleshooting
Symptom Possible Cause Action
Internal stepper motor 
making noise when the 
sample plate is moving 
Normal operation of the 
sample plate stepper 
motor
No action. Normal 
occurrence.
High whining sound when 
you power up the mass 
spectrometer
Normal startup operation 
of the turbo pump
No action. Normal 
occurrence.
Internal stepper motor 
making grinding noise 
when the sample plate is 
not moving or is moving 
erratically.
“Home or Load position 
not found” may be 
displayed on startup.
Problem with sample 
positioning system
1. Reboot computer by 
pressing Control+Alt+ 
Delete. 
Do not restart 
software. 
2. Call PerSeptive 
Biosystems Technical 
Support.
In Automatic Control 
mode, center of sample 
position is not aligned with 
laser spot, as observed on 
the video monitor
Sample plate not aligned Align. See Section 2.7, 
Aligning the Sample Plate.










