User`s guide
Aligning the Sample Plate
Voyager
™
 Biospectrometry
™
 Workstation User’s Guide 2-39
2
2.7 Aligning the Sample Plate
In this section
This section describes:
•Overview
• When to align
• .PLT files and multiple alignments
• How the system aligns a plate
• Overview of video monitor display
• What you need
• Corner positions in .PLT files
• Using the control stick
• Before aligning
•Aligning
• Alignment information saved for future use
Overview
The Sample Plate Alignment function allows you to align the 
center of sample positions under the laser beam.
When to align
For most standard welled plates and .PLT files provided, 
alignment is not frequently required.
Alignment is more typically required:
• When you are using a custom .PLT file and are spotting 
sample plates using an automated device.
• When you are using Teflon
™
 plates, because there can be 
some variation in the laser-etched indentations on the 
plate.
Align the Sample Plate if the laser beam is not centered on a 
sample position: 
• When you advance to a sample position using the 
Manual Sample Position control page
• Before you acquire data from the Instrument 
Control Panel and use automated sample 
positioning
• Before you acquire data from the Sequence 
Control Panel










