User Guide

Pairwise Analysis
Advanced Settings
15. If Advanced Pairwise Settings
was turned on in the Preferences
section, additional parameters are
made available for use in analysis.
16. Select an Upper threshold if you
would like to set an upper cutoff for
the fold differences between
Groups 1 and 2.
17. You may decide to include a
Correction factor for multiple
testing. Options include
Bonferroni (step adjusted p-value),
Holm (step down adjusted p-value),
Benjamini and Hochberg (false
discovery rate), Westfall and
Young - maxT or None. If you
select a correction method, you
must also be performing a statistical
test.
18. Perform your analysis by selecting
the Analyze button.
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