User Guide

Pairwise Analysis
Set-Up
Pairwise Analysis allows you to set up
two groups of data and look for genes that
are differentially expressed between the two
groups.
1. Select Pairwise under the Analysis
heading from the Control Panel.
2. A list of available arrays will show on
the screen, along with a description if
it was entered upon upload.
3. Select the Analyze icon ( ) to
perform a pairwise analysis for a
particular array.
4. Upon selecting the Analyze icon, a
list of experiments performed using
that array is displayed. The
experiments are grouped by
condition. Select the experiments for
Group 1 by checking the
corresponding boxes in the Group 1
column.
5. Likewise, select the experiments for
Group 2.
6. For an overview of experiment details,
select the Document icon ( ).
7. You can now select Analysis
Settings parameters to be used in the
Pairwise Analysis.
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