User's Guide
Table Of Contents
- Digital LightCycler® System
- Safety
- User Assistance
- System description
- Overview of the system
- Overview of the instruments
- Overview of the software components
- Overview of the partitioning engine software
- Overview of the web application
- Overview of the analyzer software
- Overview of the development software
- Common software functions
- Overview of the supplies
- Overview of orders, run prerequisites, and results
- Maintenance overview
- Specifications
- Operation
- Overview of routine tasks
- Overview of diagnostic workflow
- Overview of development workflow without unassigned sample setup
- Overview of development workflow with unassigned sample setup
- Diagnostic workflow (quick reference)
- Development workflow without unassigned sample setup (quick reference)
- Development workflow with unassigned sample setup (quick reference)
- Frequently performed tasks
- Before routine operation
- Routine operation of diagnostic workflow
- Routine operation of development workflow
- Performing a development workflow without unassigned sample setup
- Performing a development workflow with unassigned sample setup
- Projects in the development software
- Run profiles in the analyzer software
- Entering run information for a development run in the analyzer software
- Runs in the development software
- About raw data files and runs
- Managing raw data files of development runs in the analyzer software
- Exporting raw data files of diagnostic runs from the web application
- Working with raw data files and runs in the development software
- Assigning partially matching unassigned sample setups to development runs in the development software
- List of columns on the Sample setup table view card
- Adding and editing lane settings of a run in the development software
- Working with sample groups in the development software
- Editing lane settings via copy and paste in the development software
- Clustering in the development software
- Analyses in the development software
- Unassigned sample setups in the development software
- About unassigned sample setups in the development software
- Working with unassigned sample setups in the development software
- Adding run settings and lane settings to unassigned sample setups in the development software
- Creating a sample setup report of an unassigned sample setup in the development software
- Analysis packages in the development software
- After routine operation
- Non-routine operation
- Overview of routine tasks
- Maintenance
- Maintenance
- Maintenance schedule
- Replacing the partitioning fluid bottle and/or the liquid waste bottle on the partitioning engine
- Data maintenance on the analyzer
- Cleaning and decontamination
- About preventive maintenance
- Maintenance
- Troubleshooting
- Flags
- Troubleshooting the partitioning engine
- Troubleshooting the analyzer
- Troubleshooting in the development software
- Troubleshooting in the web application
- Configuration
- User management in the analyzer software
- Administration of the analyzer software
- Settings in the development software
- Analytical principles
- Glossary
- Index
390 Analyses in the development software
Roche Diagnostics
D
igitalLightCycler
®
System · Software version 1.0 · User Assistance · Publication version 1.1
Analysis setup tab
On the Analysis setup tab, create the analysis setups:
• Choose the combinations of master mix reagent,
variant target, and reference target.
• Enter the minimum percentage of the variant
sequence.
• Optionally, enter the limits of validity.
MMx drop-down list
Lists the master mix reagents for which a sample was
included in the analysis on the Sample selection tab.
Variant drop-down list and Reference target
drop-down list
List the targets for which a sample was included in the
analysis on the Sample selection tab.
Variant target and reference target must be different:
If you choose a target from one of the drop-down lists, it
is not available anymore from the other drop-down list.
Min. variant [%] field
Defines the minimum percentage of the variant
sequence that must be present in the sample for it to be
variant positive.
Default value:
• Minimum percentage of the variant = 1.0000%
Limit of validity (for the total concentration of
the variant and the wild type) check box,
Lower limit of validity field, and Upper limit of
validity field
If the limit of validity is enabled, the sum of the measured
concentrations of the variant sequence and the wild-type
sequence must fall within the configured range.
If the concentration is outside the configured range, the
corresponding final (qualitative) result is invalid.
The lower limit of validity must be lower than the upper
limit of validity.
Default values:
• Limit of validity = enabled
• Lower limit of validity = 200.0000cp/µl
• Upper limit of validity = 500000.0000cp/µl
14 Routine operation of development workflow
Draft - Do Not Distribute










