Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index

6–Using Other MPIs
Open MPI
6-4 IB6054601-00 H
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To compile your program in C, type:
$ mpicc mpi_app_name.c -o mpi_app_name
Running Open MPI Applications
By default, Open MPI shipped with the InfiniPath software stack will run over PSM
once it is installed.
Here is an example of a simple mpirun command running with four processes:
$ mpirun -np 4 -machinefile mpihosts mpi_app_name
To specify the PSM transport explicitly, add --mca mtl psm to the above
command line.
To run over IB Verbs instead, use this mpirun command line:
$ mpirun -np 4 -machinefile mpihosts --mca btl sm --mca btl
openib,self --mca mtl ^psm mpi_app_name
The following command enables shared memory:
--mca btl sm
The following command enables openib transport and communication to self:
--mca btl openib, self
The following command disables PSM transport:
--mca mtl ^psm
In these commands, btl stands for byte transport layer and mtl for matching
transport layer.
PSM transport works in terms of MPI messages. OpenIB transport works in terms
of byte streams.
Alternatively, you can use Open MPI with a sockets transport running over IPoIB,
for example:
$ mpirun -np 4 -machinefile mpihosts --mca btl sm --mca btl
tcp,self --mca btl_tcp_if_exclude eth0 --mca btl_tcp_if_include
ib0 --mca mtl ^psm mpi_app_name
Note that eth0 and psm are excluded, while ib0 is included. These instructions
may need to be adjusted for your interface names.
Note that in Open MPI, machinefile is also known as the hostfile.
Further Information on Open MPI
For more information about Open MPI, see:
http://www.open-mpi.org/
http://www.open-mpi.org/faq