Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index
5–Using QLogic MPI
QLogic MPI Details
IB6054601-00 H 5-9
A
Also, use mpif77, mpif90, or mpif95 for linking; otherwise, .true. may have
the wrong value.
If you are not using the provided scripts for linking, link a sample program using
the -show option as a test (without the actual build) to see what libraries to add to
your link line. Some examples of the using the PGI compilers follow.
For Fortran 90 programs:
$ mpif90 -f90=pgf90 -show pi3f90.f90 -o pi3f90
pgf90 -I/usr/include/mpich/pgi5/x86_64 -c -I/usr/include
pi3f90.f90 -c
pgf90 pi3f90.o -o pi3f90 -lmpichf90 -lmpich -lmpichabiglue_pgi5
Fortran 95 programs will be similar to the above.
For C programs:
$ mpicc -cc=pgcc -show cpi.c
pgcc -c cpi.c
pgcc cpi.o -lmpich -lpgftnrtl -lmpichabiglue_pgi5
Fortran 77 mpif77 -fc=pgf77 .....
Fortran 90/95 mpif90 -f90=pgf90 .....
mpif95 -f95=pgf95 .....
Table 5-5. Intel
Compiler Command
C $ mpicc -cc=icc .....
C++ $ mpicc -CC=icpc
Fortran 77 $ mpif77 -fc=ifort .....
Fortran 90/95 $ mpif90 -f90=ifort .....
$ mpif95 -f95=ifort .....
Table 5-4. Portland Group (PGI) (Continued)
Compiler Command