Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index

4–InfiniPath Cluster Setup and Administration
Host Environment Setup for MPI
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Change the file to mode 600 when you are finished editing.
4. On each node, the system file /etc/ssh/sshd_config must be edited,
so that the following four lines are uncommented (no # at the start of the line)
and set to yes. (These lines are usually there, but are commented out and
set to no by default.)
RhostsAuthentication yes
RhostsRSAAuthentication yes
HostbasedAuthentication yes
PAMAuthenticationViaKbdInt yes
5. After creating or editing the three files in Steps 2, 3, and 4, sshd must be
restarted on each system. If you are already logged in via
ssh (or any other
user is logged in via
ssh), their sessions or programs will be terminated, so
restart only on idle nodes. Type the following (as root) to notify sshd to use
the new configuration files:
# killall -HUP sshd
At this point, any end user should be able to login to the ip-fe front end system
and use ssh to login to any InfiniPath node without being prompted for a
password or pass phrase.
Configuring for ssh Using ssh-agent
The ssh-agent, a daemon that caches decrypted private keys, can be used to
store the keys. Use ssh-add to add your private keys to ssh-agent’s cache.
When ssh establishes a new connection, it communicates with ssh-agent to
acquire these keys, rather than prompting you for a passphrase.
The process is described in the following steps:
1. Create a key pair. Use the default file name, and be sure to enter a
passphrase.
$ ssh-keygen -t rsa
NOTE:
This command terminates all ssh sessions into that system. Run from
the console, or have a way to log into the console in case of any
problem.