Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index

E–Write Combining
PAT and Write Combining
E-2 IB6054601-00 H
S
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If you do not see any of these messages on your console, but suspect this
problem, check the /var/log/messages file. Some systems suppress driver
load messages but still output them to the log file.
Methods for enabling and disabling the two write combining mechanisms are
described in the following sections. There are no conflicts between the two
methods.
PAT and Write Combining
This is the default mechanism for allocating Write Combining (WC) mappings for
the PIO buffers. It is set as a parameter in /etc/modprobe.conf (on Red Hat
systems) or /etc/modprobe.conf.local (on SLES systems). The default is:
option ib_ipath wc_pat=1
If PAT is unavailable or PAT initialization fails, the code generates a message in
the log and falls back to the Memory Type Range Registers (MTRR) mechanism.
To use MTRR, disable PAT by setting this module parameter to 0 (as a root user):
option ib_ipath wc_pat=0
Then, revert to using MTRR-only behavior by following one of the two suggestions
in “MTRR Mapping and Write Combining” on page E-2.
The driver must be restarted after the changes have been made.
.
MTRR Mapping and Write Combining
Two suggestions for properly enabling MTRR mapping for write combining are
described in the following sections.
See “Unexpected Low Bandwidth or Poor Latency” on page D-9 for more details
on a related performance issue.
Edit BIOS Settings to Fix MTRR Issues
You can edit the BIOS setting for MTRR mapping. The BIOS setting looks similar
to:
MTRR Mapping [Discrete]
NOTE:
There will be no WC entry in /proc/mtrr when using PAT.