Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index

D–Troubleshooting
QLogic MPI Troubleshooting
IB6054601-00 H D-31
A
This message occurs when a cable is disconnected, a switch is rebooted, or when
there are other problems with the link. The job continues retrying until the
quiescence interval expires. See the mpirun -q option for information on
quiescence.
If a hardware problem occurs, an error similar to this displays:
infinipath: [error strings ] Hardware error
In this case, the MPI program terminates. The error string may provide additional
information about the problem. To further determine the source of the problem,
examine syslog on the node reporting the problem.
MPI Stats
Using the -print-stats option to mpirun provides a listing to stderr of
various MPI statistics. Here is example output for the -print-stats option
when used with an eight-rank run of the HPCC benchmark, using the following
command:
$ mpirun -np 8 -ppn 1 -m machinefile -M ./hpcc
By default, -M assumes -M=mpi and that the user wants only mpi level statistics.
The man page shows various other low-level categories of statistics that are
provided. Here is another example:
$ mpirun -np 8 -ppn 1 -m machinefile -M=mpi,ipath hpcc
STATS:
MPI Statistics Summary (max,min @ rank)
STATS:
Eager count sent
(max=171.94K @ 0, min=170.10K @ 3, med=170.20K @ 5)
STATS:
Eager bytes sent
(max=492.56M @ 5, min=491.35M @ 0, med=491.87M @ 1)
STATS:
Rendezvous count sent
(max= 5735 @ 0, min= 5729 @ 3, med= 5731 @ 7)
STATS:
Rendezvous bytes sent
(max= 1.21G @ 4, min= 1.20G @ 2, med= 1.21G @ 0)
STATS:
Expected count received
(max=173.18K @ 4, min=169.46K @ 1, med=172.71K @ 7)
STATS:
Expected bytes received
(max= 1.70G @ 1, min= 1.69G @ 2, med= 1.70G @ 7)
STATS:
Unexpect count received
(max= 6758 @ 0, min= 2996 @ 4, med= 3407 @ 2)
STATS:
Unexpect bytes received
(max= 1.48M @ 0, min=226.79K @ 5, med=899.08K @ 2)
STATS:
MPI Statistics Summary
(max,min @ rank)
STATS:
Eager count sent
(max=171.94K @ 0, min=170.10K @ 3, med=170.22K @ 1)
STATS:
Eager bytes sent
(max=492.56M @ 5, min=491.35M @ 0, med=491.87M @ 1)
STATS:
Rendezvous count sent
(max= 5735 @ 0, min= 5729 @ 3, med= 5731 @ 7)
STATS:
Rendezvous bytes sent
(max= 1.21G @ 4, min= 1.20G @ 2, med= 1.21G @ 0)
STATS:
Expected count received
(max=173.18K @ 4, min=169.46K @ 1, med=172.71K @ 7)
STATS:
Expected bytes received
(max= 1.70G @ 1, min= 1.69G @ 2, med= 1.70G @ 7)
STATS:
Unexpect count received
(max= 6758 @ 0, min= 2996 @ 4, med= 3407 @ 2)
STATS:
Unexpect bytes received
(max= 1.48M @ 0, min=226.79K @ 5, med=899.08K @ 2)
STATS:
InfiniPath low-level protocol stats
STATS:
pio busy count
(max=190.01K @ 0, min=155.60K @ 1, med=160.76K @ 5)
STATS:
scb unavail exp count
(max= 9217 @ 0, min= 7437 @ 7, med= 7727 @ 4)
STATS:
tid update count
(max=292.82K @ 6, min=290.59K @ 2, med=292.55K @ 4)
STATS:
interrupt thread count
(max= 941 @ 0, min= 335 @ 7, med= 439 @ 2)
STATS:
interrupt thread success
(max= 0.00 @ 3, min= 0.00 @ 1, med= 0.00 @ 0)