Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index

D–Troubleshooting
QLogic MPI Troubleshooting
D-12 IB6054601-00 H
S
Here is an example:
# cat /sys/class/infiniband/ipath*/device/irq
98
# ls /proc/irq
0 10 11 13 15 233 4 50 7 8 90
1 106 12 14 2 3 5 58 66 74 9
(Note that you cannot find 98.)
# cat /proc/interrupts|grep ib_ipath|awk \
’{print $1}’|sed -e ’s/://’
106
# echo 01 > /proc/irq/106/smp_affinity
Using the echo command immediately changes the processor affinity of an IRQ.
You can look at the stats in /proc/interrupts while the adapter is active to
observe which CPU is fielding ib_ipath interrupts.
Performance Warning if ib_ipath Shares Interrupts with
eth0
When ib_ipath shares interrupts with eth0, performance may be affected the
OFED ULPs, such as IPoIB. A warning message appears in syslog, and also on
the console or tty session where /etc/init.d/openibd start is run (if
messages are set up to be displayed). Messages are in this form:
Nov 5 14:25:43 <nodename> infinipath: Shared interrupt will
affect performance: vector 169: devices eth0, ib_ipath
Check /proc/interrupts: "169" is in the first column, and "devices" are shown
in the last column.
You can also contact your system vendor to see if the BIOS settings can be
changed to avoid the problem.
QLogic MPI Troubleshooting
Problems specific to compiling and running MPI programs are described in the
following sections.
NOTE:
The contents of the smp_affinity file may not reflect the expected
values, even though the affinity change has taken place.
If the driver is reloaded, the affinity assignment will revert to the default,
so you will need to reset it to the desired value.