Product specifications
Table Of Contents
- Table of Contents
- 1 Introduction
- 2 Feature Overview
- 3 Step-by-Step Cluster Setup and MPI Usage Checklists
- 4 InfiniPath Cluster Setup and Administration
- Introduction
- Installed Layout
- Memory Footprint
- BIOS Settings
- InfiniPath and OpenFabrics Driver Overview
- OpenFabrics Drivers and Services Configuration and Startup
- Other Configuration: Changing the MTU Size
- Managing the InfiniPath Driver
- More Information on Configuring and Loading Drivers
- Performance Settings and Management Tips
- Host Environment Setup for MPI
- Checking Cluster and Software Status
- 5 Using QLogic MPI
- Introduction
- Getting Started with MPI
- QLogic MPI Details
- Use Wrapper Scripts for Compiling and Linking
- Configuring MPI Programs for QLogic MPI
- To Use Another Compiler
- Process Allocation
- mpihosts File Details
- Using mpirun
- Console I/O in MPI Programs
- Environment for Node Programs
- Environment Variables
- Running Multiple Versions of InfiniPath or MPI
- Job Blocking in Case of Temporary InfiniBand Link Failures
- Performance Tuning
- MPD
- QLogic MPI and Hybrid MPI/OpenMP Applications
- Debugging MPI Programs
- QLogic MPI Limitations
- 6 Using Other MPIs
- A mpirun Options Summary
- B Benchmark Programs
- C Integration with a Batch Queuing System
- D Troubleshooting
- Using LEDs to Check the State of the Adapter
- BIOS Settings
- Kernel and Initialization Issues
- OpenFabrics and InfiniPath Issues
- Stop OpenSM Before Stopping/Restarting InfiniPath
- Manual Shutdown or Restart May Hang if NFS in Use
- Load and Configure IPoIB Before Loading SDP
- Set $IBPATH for OpenFabrics Scripts
- ifconfig Does Not Display Hardware Address Properly on RHEL4
- SDP Module Not Loading
- ibsrpdm Command Hangs when Two Host Channel Adapters are Installed but Only Unit 1 is Connected to the Switch
- Outdated ipath_ether Configuration Setup Generates Error
- System Administration Troubleshooting
- Performance Issues
- QLogic MPI Troubleshooting
- Mixed Releases of MPI RPMs
- Missing mpirun Executable
- Resolving Hostname with Multi-Homed Head Node
- Cross-Compilation Issues
- Compiler/Linker Mismatch
- Compiler Cannot Find Include, Module, or Library Files
- Problem with Shell Special Characters and Wrapper Scripts
- Run Time Errors with Different MPI Implementations
- Process Limitation with ssh
- Number of Processes Exceeds ulimit for Number of Open Files
- Using MPI.mod Files
- Extending MPI Modules
- Lock Enough Memory on Nodes When Using a Batch Queuing System
- Error Creating Shared Memory Object
- gdb Gets SIG32 Signal Under mpirun -debug with the PSM Receive Progress Thread Enabled
- General Error Messages
- Error Messages Generated by mpirun
- MPI Stats
- E Write Combining
- F Useful Programs and Files
- G Recommended Reading
- Glossary
- Index

6–Using Other MPIs
Improving Performance of Other MPIs Over IB Verbs
6-12 IB6054601-00 H
S
To compile your program in C using the default compiler, type:
$ mpicc mpi_app_name.c -o mpi_app_name
To use the Intel compiler wrappers (mpiicc, mpiicpc, mpiifort), the Intel
compilers must be installed and resolvable from the user’s environment.
Running Intel MPI Applications
Here is an example of a simple mpirun command running with four processes:
$ mpirun -np 4 -f mpihosts mpi_app_name
For more information, follow the Intel MPI instructions for usage of mpdboot and
mpirun. Remember to use -r ssh with mpdboot if you use ssh. Pass the
following option to mpirun to select uDAPL:
-genv I_MPI_DEVICE rdma:OpenIB-cma
To help with debugging, you can add this option to the Intel mpirun command:
-genv I_MPI_DEBUG 2
Further Information on Intel MPI
For more information on using Intel MPI, see: http://www.intel.com/
Improving Performance of Other MPIs Over IB
Verbs
Performance of MPI applications when using an MPI implementation over IB
Verbs can be improved by tuning the IB MTU size.
mpif77 Fortran 77
mpif90 Fortran 90
mpiicc C (uses Intel C compiler)
mpiicpc C++ (uses Intel C++ compiler)
mpiifort Fortran 77/90 (uses Intel Fortran compiler)
NOTE:
No manual tuning is necessary for PSM-based MPIs, since the PSM layer
determines the largest possible IB MTU for each source/destination path.
Table 6-6. Intel MPI Wrapper Scripts (Continued)
Wrapper Script Name Language