HP XC System Software Administration Guide Version 4.0
Table Of Contents
- XC Administration Guide
- Table of Contents
- About This Document
- 1 HP XC Administration Environment
- 1.1 Understanding Nodes, Services, and Roles
- 1.2 File System
- 1.3 HP XC Command Environment
- 1.4 Configuration and Management Database
- 1.5 HP XC Configuration File Guidelines
- 1.6 Installation and Software Distribution
- 1.7 Improved Availability
- 1.8 Networking
- 1.9 Modulefiles
- 1.10 Security
- 1.11 Recommended Administrative Tasks
- 2 Improved Availability
- 3 Starting Up and Shutting Down the HP XC System
- 4 Managing and Customizing System Services
- 4.1 HP XC System Services
- 4.2 Displaying Services Information
- 4.3 Restarting a Service
- 4.4 Stopping a Service
- 4.5 Global System Services
- 4.6 Customizing Services and Roles
- 4.6.1 Overview of the HP XC Services Configuration
- 4.6.2 Service Configuration Sequence of Operation
- 4.6.3 Assigning Roles with the cluster_config Utility
- 4.6.4 The *config.d Directories
- 4.6.5 Configuration Scripts
- 4.6.6 Understanding Global Configuration Scripts
- 4.6.7 Advance Planning
- 4.6.8 Editing the roles_services.ini File
- 4.6.9 Creating a service.ini File
- 4.6.10 Adding a New Service
- 4.6.11 Verifying a New Service
- 5 Managing Licenses
- 6 Managing the Configuration and Management Database
- 6.1 Accessing the Configuration and Management Database
- 6.2 Querying the Configuration and Management Database
- 6.3 Finding and Setting System Attribute Values
- 6.4 Backing Up the Configuration Database
- 6.5 Restoring the Configuration Database from a Backup File
- 6.6 Archiving Sensor Data from the Configuration Database
- 6.7 Restoring the Sensor Data from an Archive File
- 6.8 Purging Sensor Data from the Configuration and Management Database
- 6.9 Dumping the Configuration and Management Database
- 7 Monitoring the System
- 7.1 Monitoring Tools
- 7.2 Monitoring Strategy
- 7.3 Displaying System Environment Data
- 7.4 Monitoring Disks
- 7.5 Displaying System Statistics
- 7.6 Logging Node Events
- 7.7 The collectl Utility
- 7.8 Using HP Graph To Display Network Bandwidth and System Use
- 7.9 The resmon Utility
- 7.10 The kdump Mechanism and the crash Utility
- 8 Monitoring the System with Nagios
- 8.1 Nagios Overview
- 8.2 Using the Nagios Web Interface
- 8.3 Adjusting the Nagios Configuration
- 8.4 Configuring Nagios on HP XC Systems
- 8.5 Using the Nan Notification Aggregator and Delimiter To Control Nagios Messages
- 8.6 Nagios Report Generator Utility
- 8.7 Modifying Nagios To Effect Changes
- 9 Network Administration
- 10 Managing Patches and RPM Updates
- 11 Distributing Software Throughout the System
- 11.1 Overview of the Image Replication and Distribution Environment
- 11.2 Installing and Distributing Software Patches
- 11.3 Adding Software or Modifying Files on the Golden Client
- 11.4 Determining Which Nodes Will Be Imaged
- 11.5 Updating the Golden Image
- 11.6 Propagating the Golden Image to All Nodes
- 11.7 Maintaining a Global Service Configuration
- 12 Opening an IP Port in the Firewall
- 13 Connecting to a Remote Console
- 14 Managing Local User Accounts and Passwords
- 14.1 HP XC User and Group Accounts
- 14.2 General Procedures for Administering Local User Accounts
- 14.3 Adding a Local User Account
- 14.4 Modifying a Local User Account
- 14.5 Deleting a Local User Account
- 14.6 Configuring the ssh Keys for a User
- 14.7 Synchronizing the NIS Database
- 14.8 Changing Administrative Passwords
- 14.8.1 Changing the Superuser Password
- 14.8.2 Changing the CMDB Password
- 14.8.3 Changing the Interconnect Password
- 14.8.4 Changing the Console Port Password
- 14.8.5 Synchronizing the BMC/IPMI Password for CP6000 Systems
- 14.8.6 Changing the Nagios Administrator Password
- 14.8.7 Changing the LSF Administrator Password
- 15 Managing SLURM
- 16 Managing LSF
- 16.1 Standard LSF
- 16.2 LSF with SLURM
- 16.3 Switching the Type of LSF Installed
- 16.4 LSF with SLURM Installation
- 16.5 LSF with SLURM Startup and Shutdown
- 16.6 Controlling the LSF with SLURM Service
- 16.7 Launching Jobs with LSF with SLURM
- 16.8 Monitoring and Controlling LSF with SLURM Jobs
- 16.9 Maintaining Shell Prompts in LSF Interactive Shells
- 16.10 Job Accounting
- 16.11 LSF Daemon Log Maintenance
- 16.12 Load Indexes and Resource Information
- 16.13 LSF with SLURM Monitoring
- 16.14 LSF with SLURM Failover
- 16.15 Moving SLURM and LSF Daemons to Their Backup Nodes
- 16.16 Enhancing LSF with SLURM
- 16.17 Configuring an External Virtual Host Name for LSF with SLURM on HP XC Systems
- 17 Managing Modulefiles
- 18 Mounting File Systems
- 19 Managing Software RAID Arrays
- 20 Using Diagnostic Tools
- 20.1 Using the sys_check Utility
- 20.2 Using the ovp Utility for System Verification
- 20.3 Using the dgemm Utility to Analyze Performance
- 20.4 Using the System Interconnect Diagnostic Tools
- 21 Troubleshooting
- 21.1 General Troubleshooting
- 21.2 Nagios Troubleshooting
- 21.3 Messages Reported by Nagios
- 21.4 System Interconnect Troubleshooting
- 21.5 Improved Availability Issues
- 21.5.1 How To Start HP Serviceguard When Only the Head Node is Running
- 21.5.2 Restart Serviceguard Quorum Server if Quorum Server Node is Re-imaged
- 21.5.3 Known Limitation if Nagios is Configured for Improved Availability
- 21.5.4 Network Restart Command Negatively Affects Serviceguard
- 21.5.5 Problem Failing Over Database Package Under Serviceguard
- 21.6 SLURM Troubleshooting
- 21.7 LSF Troubleshooting
- 22 Servicing the HP XC System
- 22.1 Adding a Node
- 22.2 Replacing a Client Node
- 22.3 Actualizing Planned Nodes
- 22.4 Replacing a Server Blade Enclosure OnBoard Administrator
- 22.5 Replacing a System Interconnect Board in an HP CP6000 System
- 22.6 Software RAID Disk Replacement
- 22.7 Incorporating External Network Interface Cards
- 22.7.1 Gathering Information
- 22.7.2 Editing the platform_vars.ini File
- 22.7.3 Using the device_config Command
- 22.7.4 Updating the Database for the External Network Card
- 22.7.5 Updating the Firewall Custom Configuration
- 22.7.6 Reconfiguring the Nodes
- 22.7.7 Verifying Success
- 22.7.8 Updating the Golden Image
- A Installing LSF with SLURM into an Existing Standard LSF Cluster
- B Setting Up MPICH
- C HP MCS Monitoring
- D CPU Frequency-Based Power-Saving Feature
- Glossary
- Index

Table 16-3 Environment Variables for LSF with SLURM Enhancement (lsf.conf File) (continued)
DescriptionEnvironment Variable
This entry in the lsf.conf file defines the upper limit for the number
of processors that are changed since the last checking cycle.
The default value is 0.
LSF_HPC_NCPU_INCREMENT=increment
This entry specifies the minimum number of consecutive cycles in
which the number of processors changed does not exceed
LSF_HPC_NCPU_INCREMENT. LSF with SLURM checks total usable
processors every 2 minutes.
LSF_HPC_NCPU_INCR_CYCLES=icycles
This entry specifies the percentage of total usable processors in the
LSF partition.
The default is 80.
LSF_HPC_NCPU_THRESHOLD=threshold
Some LSF with SLURM communication can occur through privileged
ports. This setting disables privileged ports usage ensuring that no
communication occurs through privileged ports. Disabling privileged
ports helps to ensure system security.
By default, LSF with SLURM daemons and clients running under the
root account use privileged ports to communicate with each other. If
LSF_NON_PRIVILEGED_PORTS is undefined, and if LSF_AUTH is
not defined in lsf.conf file, LSF daemons check the privileged port
of request message to perform authentication.
If LSF_NON_PRIVILEGED_PORTS=Y is defined, LSF with SLURM
clients (LSF commands and daemons) do not use privileged ports to
communicate with daemons, and LSF daemons do not check
privileged ports of incoming requests to do authentication.
This setting is undefined by default.
LSF_NON_PRIVILEGED_PORTS=Y|y
This setting disables cleanup of jobs other than LSF jobs running in
a SLURM LSF partition.
By default, only LSF jobs are allowed to run within a SLURM LSF
partition. LSF with SLURM periodically cleans up any jobs submitted
outside of LSF with SLURM. This cleanup period is defined through
LSB_RLA_UPDATE.
For example, the following srun job is not submitted through LSF
with SLURM, so it is ended:
% srun -n 4 -p lsf sleep 100000srun: error: n13: task[0-1]:
Terminated srun: Terminating job
If LSF_SLURM_DISABLE_CLEANUP=Y is set, this job would be
allowed to run.
This setting is undefined by default.
LSF_SLURM_DISABLE_CLEANUP=y|Y
This setting specifies the LSF with SLURM tmp directory for HP XC
systems. The default LSF_TMPDIR /tmp cannot be shared across
nodes, so LSF_SLURM_TMPDIR must specify a path that is accessible
on all nodes of the HP XC system. LSF_SLURM_TMPDIR affects only
HP XC configuration. It is ignored on other systems in a mixed cluster
environment. The location of LSF with SLURM tmp directory is
determined in the following order:
• LSF_SLURM_TMPDIR, if defined
• LSF_TMPDIR, if defined
• The default shared directory /hptc_cluster/lsf/tmp
The default path is /hptc_cluster/lsf/tmp.
LSF_SLURM_TMPDIR=path
Table 16-4 describes the environment variables in the lsb.queues file that you can use to
enhance LSF with SLURM.
210 Managing LSF