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Ready Specs
3
The peak memory consumption is very similar to SOAPdenovo2. Both applications require slightly less than 800GB memory to process
3.2 BR.
Conclusion
Utilizing more cores helps to reduce the runtime of SPAdes significantly as shown in Figure 2. For SPAdes, it is recommendable to use
the highest core count CPUs like Intel Xeon Plantinum 8180 processor with 28 cores and 3.80GHz to bring down the runtime further.
Resources
Internal web page
1. http://en.community.dell.com/techcenter/blueprints/blueprint_for_hpc/m/mediagallery/20444301
External web page
2. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/
Contacts
Americas
Kihoon Yoon
Sr. Principal Systems Dev Eng
[e-mail]
[phone]
i
It refers an earlier version of SOAPdenovo, not SOAPdenovo2.