White Papers

Dell - Internal Use - Confidential

REFERENCES

1. Blueprint for High Performance Computing. Dell TechCenter. [Online]

http://en.community.dell.com/techcenter/blueprints/blueprint_for_hpc/m/mediagallery/2044347

2. ETL: The Silent Killer of Big Data Projects. insideBIGDATA. [Online]

https://insidebigdata.com/2015/07/23/etl-the-silent-killer-of-big-data-projects/.

3. Dell EMC PowerEdge Servers. [Online] https://www.dellemc.com/en-us/servers/index.htm.

4. Dell EMC Ready Bundles for HPC Storage. [Online]

https://si.cdn.dell.com/sites/doccontent/shared-content/data-sheets/en/Documents/HPC-

Storage.pdf.

5. Dell EMC Isilon F800 AND H600 I/O Performance . [Online]

https://www.emc.com/collateral/white-papers/f800-h600-performance-wp.pdf.

6. Bright Cluster Manager. [Online] http://www.brightcomputing.com/products.

7. BioBuilds. [Online] https://www.lab7.io/.

8. What is the best NGS alignment software? [Online]

https://www.ecseq.com/support/ngs/what-is-the-best-ngs-alignment-software.

9. Burrows-Wheeler Aligner. [Online] http://bio-bwa.sourceforge.net/.

10. Genome Analysis Toolkit. [Online] https://software.broadinstitute.org/gatk/.

11. European Nucleotide Archive: ERR091571. [Online]

https://www.ebi.ac.uk/ena/data/view/ERR091571.

12. Amber. [Online] http://ambermd.org/.

13. LAMMPS. [Online] http://lammps.sandia.gov/.

14. Application Performance on P100-PCIe GPUs. [Online]

http://en.community.dell.com/techcenter/high-performance-

computing/b/general_hpc/archive/2017/08/17/application-performance-on-p100-pcie-gpus.

15. HPC Applications Performance on V100. [Online]

http://en.community.dell.com/techcenter/high-performance-

computing/b/general_hpc/archive/2017/09/29/hpc-applications-performance-on-v100.

The tested sequencing data’s depth of coverage is 30x when we assume that the sequence reads are generated from

germ cells which are haploids.