White Papers

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NAMD benchmark on Apoa1, F1atpase and STMV ................................................................................. 18
CONCLUSION ........................................................................................................................ 19
APPENDIX A: BENCHMARK COMMANDS .......................................................................... 20
BWA scaling test command ..................................................................................................................... 20
BWA-GATK commands ........................................................................................................................... 20
NAMD commands .................................................................................................................................... 21
APPENDIX B: TEST DATA DESCRIPTIONS ........................................................................ 22
Sequence data for BWA scaling tests ............................................................................................. 22
Sequence data for BWA-GATK pipeline tests ................................................................................. 22
APPENDIX C: RUNNING TIME DETAILS OF BWA-GATK PIPELINE ................................. 23
REFERENCES ........................................................................................................................ 24