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APPENDIX B: Test data descriptions
Sequence data for BWA scaling tests
Table 6: Data sets for BWA scaling tests
Sample
File Size (GB)
Read Length
# of Million Fragments
SRR1060762
0.21
76
1.987
SRR593165
1.59
102
10.083
SRR786500
3.92
51
39.251
ERR754356
11.58
102
69.225
ERR754362
15.51
102
83.950
SRR1299474
11.27
52
122.253
ERR754364
29.61
102
167.366
SRR1299472
20.24
52
207.848
Sequence data for BWA-GATK pipeline tests
Table 7: Whole genome sequencing data
Species
Fastq files
Coverage Depth
Number of Raw Reads
Total Nucleotides
Homo sapiens
ERR091571
10x
422,875,838
42,710,459,638
Homo sapiens
ERR194146
50x
1,626,361,156
171,588,070,386
Bos taurus
SRR1805809
12x
163,405,319
32,681,063,800
Oryza sativa indica
SRR3098100
30x
48,379,772
12,191,702,544
Oryza sativa japonica
SRR1450198
132x
248,384,796
49,676,959,200
Sus scrofa
SRR1056427
8x
123,273,020
24,901,150,040
Sus scrofa
SRR1178925
14x
206,940,772
41,802,035,944
Zea mays
SRR1575496
11x
180,961,086
36,192,217,200