Reference Guide

Table of contents
3 Reference Architecture of Dell EMC Ready Solution for HPC Life Sciences | Document 309
Table of contents
Revisions............................................................................................................................................................................. 2
Acknowledgements ............................................................................................................................................................. 2
Table of contents ................................................................................................................................................................ 3
Executive summary ............................................................................................................................................................. 4
1 Introduction ................................................................................................................................................................... 5
2 Solution Overview ........................................................................................................................................................ 6
2.1 Architecture ......................................................................................................................................................... 6
2.2 Compute and Management Components .......................................................................................................... 7
2.3 Storage Components .......................................................................................................................................... 9
2.3.1 Dell EMC Ready Solution for HPC Lustre Storage ............................................................................................ 9
2.4 Network Components ....................................................................................................................................... 11
2.4.1 Dell Networking H1048-OPF ............................................................................................................................ 11
2.4.2 Mellanox SB7700.............................................................................................................................................. 11
2.4.3 Dell Networking S3048-ON .............................................................................................................................. 11
2.5 Reference Architecture ..................................................................................................................................... 11
2.6 Software Components ...................................................................................................................................... 13
3 Performance Evaluation and Analysis ....................................................................................................................... 15
3.1 Variant Calling analysis performance ............................................................................................................... 15
3.1.1 Single Sample Test .......................................................................................................................................... 16
3.1.2 Single Sample per node/Multiple node test ...................................................................................................... 17
3.2 De Novo Assembly Performance ..................................................................................................................... 18
3.2.1 SOAPdenovo2 .................................................................................................................................................. 19
3.2.2 SPAdes ............................................................................................................................................................. 19
4 Conclusion .................................................................................................................................................................. 21
A Technical support and resources ............................................................................................................................... 22
A.1 Related resources............................................................................................................................................. 22