Software Updates User guide
Resources
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When both software and instrument updates are selected, the software will update, restart, 
and then the instrument updates will begin. Instruments will need to be restarted once their 
updates have been completed. 
For the latest updates to be downloaded, the computer running CFX Manager software must 
be connected to the Internet. All data analysis windows must be closed and all instruments 
idle before updates can begin.
When an instrument is connected to the computer, CFX Manager software will check for 
compatibility with the CFX Manager software version installed. If the instrument software is not 
compatible, this software will be automatically updated. No Internet connection is required for 
this operation.
To prevent the updates window appearing whenever new updates are available, uncheck the 
Notify when updates are available box in the Updates window. To reenable the Update 
window popup, select Help > Check for Updates from the main software menu bar and 
check the Notify when updates are available box. 
NOTE: MiniOpticon
TM
 instruments cannot be updated using the CFX Manager 
software.
Retrieving Data Files from the Thermal Cycler Base
Data files located on the thermal cycler base can be retrieved to the hard drive of an attached 
computer. To retrieve files, follow these steps:
1. From the main software window, select an instrument from the detected instruments 
pane.
2. Right-click and select Retrieve Data Files...
3. Choose a folder location to save the retrieved files. 
4. Click Okay.
NOTE: All of the files in the real-time data folder on the thermal cycler base will be 
retrieved to the computer.
LIMS Integration
CFX Manager software can be configured for use with a Laboratory Information Management 
System (LIMS). For LIMS integration, CFX Manager software requires plate setup information 
generated by the LIMS platform (a LIMS file, *.plrn), a protocol file created using CFX Manager 
software (*.prcl), a defined data export location, and a defined export format.
Setting up LIMS Folder and Data Export Options
1. Select Tools > Options from the main software menu bar then select the LIMS tab 
(Figure 100) to define the folder location that will contain the LIMS protocol (*.prcl), LIMS 
file (*.plrn), and exported data.










