Software Manual
Phase Controls and Parameters
User Guide   |   145
System CIP (Clean in Place) — Storage Parameters
Note:  System CIP must be run as the only type of phase in the method. You 
can add several System CIP phases to the method if multiple cleaning solutions 
ar
e required. Bio-Rad recommends that you save System CIP as a separate 
method.
If the system has been exposed to hazardous biological material, run System CIP 
and Column CIP to flush the entir
e system tubing with sanitizing solution (for 
example, NaOH) followed by neutral buffer and finally distilled water before service 
or maintenance.
This phase cleans the system after purification runs by rinsing the system with 
cleaning solution. Perform System CIP when r
equired; for example, between runs 
where different samples and buffers are used or before storing the system. This 
helps prevent cross-contamination between runs and prevents bacterial growth in 
the instrument during storage. 
Depending on the modules in the fluidic scheme, choose the scope of cleaning by 
selecting checkboxes for the dif
ferent valves, ports, pumps, column positions, 
modules, and loops to clean and fill with cleaning solution. The System CIP method 
includes two System CIP phases to facilitate the use of two different solutions; for 
example, NaOH, buffer solution, or distilled water. Select values for flow rate, 
volume per position, and incubation time.
Note:  Each phase uses one cleaning solution. All inlet lines selected in one 
phase should be immersed in the same cleaning solution.
Special Considerations
When the fluidic scheme includes a buffer blending valve, NGC systems perform 
System CIP differently depending on whether the buffer selection is manually 
prepared via the buffer blending valve, blended through the buffer blending valve, or 
manually prepared through buffer inlet valves. Note the following special 
considerations regarding System CIP with a buffer blending valve in the fluidic 
scheme.










